Zooming into the cells – Genomics and Bioinformatics

When you Google the terms “Deep learning and Medicine” or “Machine learning and medicine”, most of the articles you see will probably be about its uses in radiology-based diagnosis, electronic healthcare records, basically the clinical data. Over the past couple of years, there has been increasing ML research on the more cellular level, focusing on … Continue reading Zooming into the cells – Genomics and Bioinformatics

SynthEye

Recently, I submitted my thesis project, which was a culmination of my Master’s course in Machine Learning at UCL. This is my second major project combining AI with medical imaging, and I had a great experience collaborating with my supervisor, Dr. Nikolas Pontikos, and everyone at Pontikos Lab. Specifically, my project focused on Generative Adversarial … Continue reading SynthEye

Improving the GAN Part 2: Conditional and Controllable generation

Previously, I discussed in-depth the vanishing gradient problem in GANs and how it leads to unstable and ineffective learning. I then introduced the Wasserstein GAN, one of the popular solutions to this problem. While most research efforts into GANs have been in line with this goal of improving training stability, the game doesn’t end here. There … Continue reading Improving the GAN Part 2: Conditional and Controllable generation

Improving the GAN

In my previous post, I gave an introduction to generative adversarial networks (GANs), discussed the basic training algorithm, and implemented a basic GAN for generating handwritten digits. While this basic model works well and has been shown to produce decent images, there are many difficulties that one can encounter during training, a popular one being … Continue reading Improving the GAN

Predicting the sub-cellular location of a protein using machine learning

I’m sure most of us will know that proteins play a huge role in the human body. They are responsible for the metabolic reactions in our cells, carry molecules from one part of the body to another, mediate cellular repair, and form a part of our immune system. But to figure out what a protein’s … Continue reading Predicting the sub-cellular location of a protein using machine learning

Modelling the Relationship Between Structural and Functional Connectomes

As part of my biomedical imaging module, I participated in a group project focused on studying the connectome using graph theory and parametric models. In this post, I’ll briefly overview connectomics, how connectomes are constructed, our team’s experiments, and my big takeaways from the project. What is connectomics? If you’ve read a lot about biological … Continue reading Modelling the Relationship Between Structural and Functional Connectomes